PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV52806.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 670aa    MW: 74248.5 Da    PI: 8.4249
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV52806.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.14.1e-24151252199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F + ++L +gD v+F   + +++el+
  KZV52806.1 151 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTSGWSAFINNKKLVSGDAVLFL--RGNDGELR 246
                 99****************************963.3445679************************************************..4489999* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++v+r+
  KZV52806.1 247 LGVRRS 252
                 ***997 PP

2Auxin_resp89.17.9e-30276358182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                 +++a+s +s F+++Yn ra +s+ +v+++k++k++ +++s G+Rfk++ etedss+r+  sG+v+ vsd+dp+rWp+SkW++L
  KZV52806.1 276 VVNAISLRSSFSILYNYRARSSDIIVPYHKFSKSVVQSFSFGTRFKIRCETEDSSNRSHgSGLVINVSDADPIRWPGSKWKCL 358
                 6899******************************************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-41147259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-39147255IPR015300DNA-binding pseudobarrel domain
CDDcd100178.63E-22149251No hitNo description
PfamPF023629.5E-22151252IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38151253IPR003340B3 DNA binding domain
SMARTSM010192.5E-22151253IPR003340B3 DNA binding domain
PfamPF065075.0E-25277358IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MTCGLIDLNA VNTEDESALL YGPSSLSRVS KKRPELVKAS PPAVSMDLWH ACAGPLSSLP  60
KKGSAAVYFP QGHLEHHRKL PAVTCDLPSH VFCRVINVEL QADANNDEVY ALVYLVRDQQ  120
IEQKWGDGIV EAEAEDEDAE DAVKHLTSHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL  180
DYKQQRPSQE LVAKDLHGVE WKFRHIYRGQ PRRHLLTSGW SAFINNKKLV SGDAVLFLRG  240
NDGELRLGVR RSTQVKSGAP LAPGIRQFNS STFSEVVNAI SLRSSFSILY NYRARSSDII  300
VPYHKFSKSV VQSFSFGTRF KIRCETEDSS NRSHGSGLVI NVSDADPIRW PGSKWKCLVV  360
KWDDSEGNNH NRVSPWEVEP SGSVSGPNGY VLPGTKRSRI SFPETKRDFP VPRGLFLIAH  420
FEDPLRFQKV FQGQEVQRLR TPFGVLEAST RPPSDTRCFP GLVFSRIHAD SASPLASTAV  480
VNDIIQCQKV SQSRETLSNL PYGRILEANQ DPGDRYTTTQ NQVQAPSLGI YWSNYHLSPT  540
LLPSPSPSSV LTSQQSNSAP PRFMPLFLGN QKKFGTSHIS LFPQCSTRNF ASSESTCHLA  600
NDTRFPRFPF QSPQLFDDDK LTSVCTKSCR LFGFSLSEGN LAASRGDNPT STAYGHENKL  660
VPSANAQVVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-934338518359Auxin response factor 1
4ldy_B1e-934338518359Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096446.10.0PREDICTED: auxin response factor 3
SwissprotO236611e-165ARFC_ARATH; Auxin response factor 3
TrEMBLA0A022QL990.0A0A022QL99_ERYGU; Auxin response factor
STRINGPGSC0003DMT4000812820.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61012333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-157ARF family protein